NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1006895

Scaffold Ga0272436_1006895


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1006895 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11904
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008598Metagenome330Y
F018488Metagenome234Y
F058564Metagenome134Y
F074201Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_10068951F058564AGGAMTPHERAADLAPIHAGTPDAGALWAGCRQPRAALADALAPAVVWTCPYCGSDDLRVLYDERRACRVSTLNDTGDPADAAPWPSYAGDELVDIDPGSFAFHCDACHSHDITPRKGGGINDRGHRHAA
Ga0272436_100689518F018488GGAMREPTRRTPVSGPGWNERAAVALLVLVAGHLLAAEVGLLTPDRLAHFVAAHDLPALVAACEGSPSDQARQGAQQLRRLIRAGQAQVYQRVLPGLPVALADPYFRLDLARAARQAGLDLFPPTRPGA
Ga0272436_10068952F074201AGGAGGMDTVDITPTPEACRQIARLFTAQKADAEAQVARATRAVDDLDATDDDALAPWGRALLAAAFAALHEAERARVRHMDEGLEALGPYANADADDGEGSDDAP
Ga0272436_10068958F008598GAGGMGNMAHLHTDDTTDDATPAHVTLTTDHVTADAAGPLAAALHTVGVTVERHTFLPVRGEEQHPSGVLLLAASGPLLPLARLVVPATAPAGVAPALVGALGIGERPVPATLQLKADGVFVSVRSRDLIDITQALDALPAQLARLDTRREERRLVYSEGVWRIDP
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