NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1007225

Scaffold Ga0272436_1007225


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1007225 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11467
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F011463Metagenome290Y
F036504Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_10072253F011463N/AMKLIIEVQINKHKRNVTYEVDDXVXLSFKNVKTMRFCKDLKDKQLDLYQITVKISTFYHFHLSVSMKHLHLMFSLKLLQSYSKDSLSKQHSESLKSITIKDNEYXKINDILNFRCYXDQIQYKVKXKDLDRNDKXYYVDKEKFNDSEKVLNEFHKLYLNKSR
Ga0272436_10072256F036504N/AMPRQDTQSAEQRVNQKEARFQQESSTLSDNENDHHKFIKLSNSLIFIETDNSIXKTXNIKIADKLDVNVNHYSTEKIRIAYVIFRLEDDADQQIYAKHCVDAFSFYQSLSELLKHLKEIYKNQNLIXKCHCKYVALKQLNKLFSSFYSEFTRIFSFLNYDNITLMNDIQNKINNHLQNALSVCLIEFSLLNKLKIFLQDVNNKQQVNYQLRDEQXTVKSIAASKKHFVFSLTSISTTSYVQLATFFTFESEXSRMSIICFNCKVSSHLSKNCSQLKTSTLTSYAFTSRLNEIIMSKEEKKLFTEKSKNEAKN
Ga0272436_10072257F001253GAGGVTFIKDVMKDVLISSTMSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRKFDDHYAKKLITHAIYLNLTV
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