NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272436_1008899

Scaffold Ga0272436_1008899


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1008899 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9778
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016760Metagenome244Y
F029944Metagenome186Y
F036995Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100889910F016760GGGGGMNVTSGIKRVARAAGRGVYILAVPKTVRRSTDELRQVEMSPALGLVLRIAAVLVLAGTVLAVHAVGHPLLSLVRAALLLVGAVVILALSGALAPQSRLLGRLLLSYAKRESVRRGLTWRGRLFRALARRLEPATSEKKEKGKTDDRQR
Ga0272436_10088992F036995AGGAGMTDYSRDDTLLAPFDGMLADGGPDRLAFEPTATGDPAVTYYTREPDGFGPDDYRWQAITDPAEIATIEGALARGVDPPYEVWVDQAPAARDLERLTLVEEGTLVYAWEQTGPAVGEGQLYEITDPVVLAAYEEAHPLQQGSVDIINPVDFYDAAWATDAARATNPALYDAQIEDLVARGDSWLEVEYAGDGFALGRYDAGPVERDTNGWEPVRVGDGPTGNAYPDEATARQAAIAYNGADLAGTRLDLAPAPIALDRNLTPALDL
Ga0272436_10088993F029944N/AMSAARRAVTGGRAYTVDGQSLVLRVREAPGPERATARVDTPPPVALRTLVAPLTWEPVQRLLAWGAREGMTAAELLDSCRTATRPPATRTRGRRAQGDEER
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.