NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1010585

Scaffold Ga0272436_1010585


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1010585 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8490
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F003820Metagenome466Y
F009377Metagenome318Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_10105854F000597N/AMKDVLISSTMSMSDDSFASESLITECVLSSNEICYSLKSLINIEAADYSFIDEVIAQIVYDQLQIEFLTLIKAKSIREFDDHYAKKLITHVICLNLTV
Ga0272436_10105855F003820N/AMKLFNYFEYDNCTLMNDLQNKINNRLQNALSVCSKNFTSLTCLRIFLQSMNNKQRVNYQLCSKRCTVIVTVIIKVTIVPDKCAATSLSITTLIINYVKSTIFFISESVRSSIVCYICKISDHLFKNCSQNKINISTFHAFILRLHEIIILKNKENEKMFSSSKNNEAKN
Ga0272436_10105859F009377N/AMTRSTELESESVSMTRYETRNAERESLLSQNXTASEEEDMNASSNIEEENTNALFFDHEMIKISISMKLNAXISAHEADNLVIFIKYICQQHDIEIKTHNDMIQMLNDINKINVELKAINIELKATQTMLNAVQTHLQKEMKKKNVIIRHLEATSSQLSTLISKDQFSKSIKLSDLSLFEDSR
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