NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272436_1016550

Scaffold Ga0272436_1016550


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1016550 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5816
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058564Metagenome134Y
F074201Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_10165506F074201AGGAGGMDTVDITPTPEACRQIARLFRQQKAQAEALAARAAQALTDLDGCDDADLAPWGRAFLTAAFEALYEDEGARIRHMAEALDALGPYAHADDSEEDHEDAH
Ga0272436_10165508F058564AGGAGMDPIGYLMHGHPLCSRCFDDDYRLDDNGAAYAHDGQSVAAVAPIHAGDPDDGVPCAGCGQPLAAPTAAGAAGIVWACPYCGSDDLRVLYDERRACRVTTLNDTGDPADAEPWPSYAGDECVDIDPSSFIFHCDACNTHDITPHKGGQTNDLGHQQAA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.