NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1018189

Scaffold Ga0272436_1018189


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1018189 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5355
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018839Metagenome232Y
F046102Metagenome151Y
F068292Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_10181891F068292N/AAHSQRESSTLSENENNYYKFIKLSNSLIFIETDDFIXKTXNIKIADKLNVNMNYYSTEKIRIVYVIFRLEDDADQQIYAKHHVDAFSFYQSLSELLKHLKEIYEDQNLIXKCRCKYVALKQLNKSFSSFYSEFTKIFSFLNYDDITLMNDIQNKINNHLQNALSVCLIEFNSLDKLKIFLQDVNNKQRVNYQLRDE
Ga0272436_10181892F046102GAGGVTFIKDVMKDVLISSTTSSSNDLFALKSFTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKFKSIREFDDHYAKKLITHAIYSNLTVQDHMKRFVFMLITRLNQHQMILEKTXMNKIEITIDMRNDYFQFSDSKTSIDASSTSLSIIKKIVIKQKSSIFT
Ga0272436_10181893F018839N/AMIIAKVVTFDRLTSDLYAAVSIIAMFIELKDEAKLTELDDFTILLNEDDFSLSXVTTEEINLFSI
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