NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1023647

Scaffold Ga0272436_1023647


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1023647 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4175
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042663Metagenome157Y
F074201Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_10236473F074201AGGMDTVDITPTPDACLQIARLFRAQRADAEALAARAAQALESLDTLDDDALAPWGRSLLAAAFEALYEDERARVHHMDEGLGALGPYADDGEGSANVP
Ga0272436_10236477F042663AGGAMTTHAIPALHLAASIPSIPPRTAIALYDGDVSVTATFRPHDPIGATEVVASIDLPDATALLHLLDATIARLTVYRDTYRQAMDADADADPAPVRAPLPLPVPWYAW

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