NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1025482

Scaffold Ga0272436_1025482


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1025482 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3893
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034417Metagenome174Y
F042663Metagenome157Y
F058564Metagenome134Y
F074201Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_10254822F042663AGGAMTTQAIPAPHVAASIPSIPARTAIALYDGDVSVTATFTPDAPIGATEVVASLDLPDDAALLNLLDTTITRLIAYRDTYRQAMTENDQPVRDEDAAPAPVRAPLPLPVPWYAW
Ga0272436_10254824F058564AGAAGGMTTKTPAPTPEWHEIDTDGLAHAYDGQGRAADMTPVHAGDLDDSAPCADCGQPLAALADACIVWTCPYCGSADLRVLYDERRACRVTTINDTGDPADAAPWPSYAGDELGDIDPGSFAFHCDACNTHDITPHKGGQTNGLGHQQAA
Ga0272436_10254825F034417AGGGGGMAWAISKPRDAWMRQAKDAWAALEPQAPHSSALRALAAIDQHTFARLIEALAALTPGRVSQELQDLAGLRPVGEVLDMPDLGDTERDADAGDIRD
Ga0272436_10254826F074201AGGAGGMNTVDITPTPEACRQIARLFRARQADAEVQAARAAQALDALDTTDDDALAPWDRDLLTAAFAALHEAERSCVRHMDEGLEVLGPYADNGKGSDDAP
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Institute for Fundamental Biomedical Research
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