NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1027145

Scaffold Ga0272436_1027145


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1027145 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3665
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021452Metagenome218Y
F048017Metagenome148Y
F065268Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_10271452F021452N/AMSDDSFDFKLFTVDVILSSLEKIFRSLALINTEVIDMTFINESLMSELCERFDIQSISLSKSKSIQLYDEISDRKSITHALYTSIMIQEHKNEMMSLLITHLD
Ga0272436_10271454F065268N/AMTRSTELESKSVSMTRYKTXNAERESLLSQNQTASEEEDMNALLNIKKENMNALLFNHEMIKISISTELNAXISAYEANDLVVFIKYMC
Ga0272436_10271455F048017N/AMKNKQLSQRQVNYLNILLKFNFQIIFRSGKMNIKVDALIQMSLVNVSESAKRFEDHFQTILIFDRVNILSINLKSNANSKSEVNLYHRVQLVNQMNEFCSKYKQAKNNNKLKLHSIKMKNCEIIDDILFRKDLLXISENMHTKLLQEVHDQSSISHLDNKQIINLVQRFYYXSDH
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