NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1078107

Scaffold Ga0272436_1078107


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1078107 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1311
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069514Metagenome123Y
F086376Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_10781071F069514N/AMQNDXAKLLLMIEFIDNNTLFSVIFSISFFLHKDFHSRMSFELDVSEYESFRECLQTTKVKNISEHMNKTLKFARESLVKTRKQMMKQVNKHRKEVDYKIES
Ga0272436_10781072F086376N/AMTRSTESESVSIARYDFQNVRRESLLSQNRTASEEKDTNALSDTEEENTNALLFDHEMIKISISIELNAXISAHEADDIVVFIKYMYQQHDIEIETHNDMIQMLEDVNEINITLKAAQTRLQKEMRNKNVIIHHLETASSRQSTSISED
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