NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311357_10689741

Scaffold Ga0311357_10689741


Overview

Basic Information
Taxon OID3300030524 Open in IMG/M
Scaffold IDGa0311357_10689741 Open in IMG/M
Source Dataset NameII_Palsa_N3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)929
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001497Metagenome / Metatranscriptome683Y
F024214Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0311357_106897411F001497GAGMWTYSDGDLTTKGCWRPGSTATAGSWALVDQGSGSVQGVVPAGEFSRRFRPVDVFADVSGFPSYLGTVTAPDGTALVDLILDRNPFMLANGPRRAARPHALLMPRRHRDGWSSATAAELAACQTAMTLVAAWYRSLDGGHVVFGANDSTPNLDYLRDVEAANGTTAGTGIAADGTTTGTGTAAAVTRNPRQDVQHAHLH
Ga0311357_106897412F024214N/AVPPDRSGRVFEDDLDRRDVVFDGNLTAMLVWHERYPLGRGWRSGWVLSYDTDGTGNSDDYIVGLSLADVDAAVAQARDYLRSVGYRARGWPLP
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