NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311357_11621550

Scaffold Ga0311357_11621550


Overview

Basic Information
Taxon OID3300030524 Open in IMG/M
Scaffold IDGa0311357_11621550 Open in IMG/M
Source Dataset NameII_Palsa_N3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)544
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015119Metagenome / Metatranscriptome257N
F023143Metagenome / Metatranscriptome211Y
F070324Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0311357_116215501F070324GGAGGMANINELMEGWGFGKQTAIGTANAGTAIWRHTNLN
Ga0311357_116215502F023143AGGAGMDWVFMQSPQGEVREVEATTEALTPLMVAGWHQVPAPAASPGPAAQKPVVPAVEEK
Ga0311357_116215503F015119N/ALRAPEQNSTATYADLFWLLVSAIPTGAPSWSSLLHFQIDPDCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE
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