NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247646_1061031

Scaffold Ga0247646_1061031


Overview

Basic Information
Taxon OID3300030546 Open in IMG/M
Scaffold IDGa0247646_1061031 Open in IMG/M
Source Dataset NameMetatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cnb11 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)821
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Rollainville
CoordinatesLat. (o)48.3625Long. (o)5.7397Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001542Metagenome / Metatranscriptome673Y

Sequences

Protein IDFamilyRBSSequence
Ga0247646_10610312F001542N/AVSVKLLFSINTMAIDPLNRKISYVAAVFAFVGVVLGVVALSTNYWSVGQSGTPSTALHTPNGTVLTSENVVWTWNGLFYQCTSGETVSCFARFCTTTFIVCLLGVIFLLVGGIFICWDLFKISDRRFVIPFLIFVACVLLTAGVFDYGSWAPLNSHSSRAMIAAIVFAYSALPISAFVAGRYSAFDRFVPNGHVGNGQKYVSTSTNGN
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