Basic Information | |
---|---|
Taxon OID | 3300030548 Open in IMG/M |
Scaffold ID | Ga0210252_11104347 Open in IMG/M |
Source Dataset Name | Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO133-ANR016SO (Eukaryote Community Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1002 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Canada: Quebec | |||||||
Coordinates | Lat. (o) | 47.2719 | Long. (o) | -71.2088 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003383 | Metagenome / Metatranscriptome | 490 | Y |
F069734 | Metagenome / Metatranscriptome | 123 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0210252_111043471 | F003383 | N/A | HLYLFLAASGAFRMIFSSMDQCIVSFCLSMRRRVTPLPRSSRSARVASLGCPVPAPFLLSRRPNPQVALWFRAFGRAGDGRSSCPERRMPLALPVSASFRVTPENLAFSYPACDEGLGSPLVLHLRLYRRWTIESPRCSHHSAVPTYQSPGFPKSQPFGIADDSLSESPRTLNPPAPIDGYPSYLGSRTIRFALVRSPSCPGHLPSATAIDQFPGCPKSWVSHRSPIPRASSCPESWFLG |
Ga0210252_111043472 | F069734 | GAG | MSPWLNRTLHPRLAPRMNLRVHSGHGKLDMASGAFFVPIRRFTIGKPSMNSPTETPTYAFYHATVAVPTSYRVT |
⦗Top⦘ |