NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247648_1163998

Scaffold Ga0247648_1163998


Overview

Basic Information
Taxon OID3300030574 Open in IMG/M
Scaffold IDGa0247648_1163998 Open in IMG/M
Source Dataset NameMetatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Db1 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)553
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Rollainville
CoordinatesLat. (o)48.3625Long. (o)5.7397Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048656Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0247648_11639981F048656GGAGGMFEKTREIIRKDRYGFPEEEFPHRVAIMGNPQTSLSRKELSLMTGCEPILAGDIQDNPAYDRSLPPSQENFLFTVTVTAELLGGTRNLVCDGKTLYLVHGMRKYRLSDEGLVRKRAVQIEIKARELTKVFDALEERILQAVTEVRSSGMDR
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