Scaffold Ga0210280_1084909

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0210280_1084909

Scaffold Ga0210280_1084909

Overview

Basic Information
Taxon OID	3300030594 Open in IMG/M
Scaffold ID	Ga0210280_1084909 Open in IMG/M
Source Dataset Name	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO141-VCO089SO (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	653
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location Name	Canada: Quebec
Coordinates	Lat. (^o)	47.2779	Long. (^o)	-71.0916	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001542	Metagenome / Metatranscriptome	673	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210280_10849091	F001542	N/A	NYWTMQAYQVPGTATPMLNGTYFTNENVEMKWNGLFYQCGMNVNVPCEYHFLPTTFVICLLGLVFMFVGGMFICWDIFQISDRRFVIPLLFFVACVLLTCGVFDYGSMSYLNSHSSRAMIACIVFVYSVLPISAFIAGRYSAFDRFVANGHVTNGQKYVPTSTN

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