NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210287_1005308

Scaffold Ga0210287_1005308


Overview

Basic Information
Taxon OID3300030598 Open in IMG/M
Scaffold IDGa0210287_1005308 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO747-VDE048SO (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1597
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameCanada: Quebec
CoordinatesLat. (o)47.296Long. (o)-71.1763Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022474Metagenome / Metatranscriptome214Y
F029822Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0210287_10053081F029822N/AQNSKTPPMSQHRAGKATGGEEVFAPSGIPPSLCNPCLFYGGDLDVSDLNAAGLSDENTLLIVGGSTTWGSVIIPAGVTAKVEGILFNVQADAAFDPLTLAYDIHTGITEGSGGTSIASGSGPALVQATGRNFLGLNEYTLEVSLSSPITLTPGQYWFNVQPQCLNTLDGSCSVFRQFASNTTMTHTNNIHGSWQPGHQMFLNGAIFGISWGNWCDPAIGNNAAQCSALSFGLRGTE
Ga0210287_10053082F022474AGGAGGVKTTLFAATFVVALSLSAVAAQKKPPVSQHLKGSAESGPVFTGQGIPPALCDPCLFYGGDLNPVAPNAVGLTDENTLLIPGSSTYASFNVASGDAVTVTGILVNVQASVNFDPLTASYDVRTGVSEGNGGTSIASGTGSVQVAATGRNFVGLNEFTVAVQLSAPLALGPGSYWFNVTPTCTNGAQDGSCSAGRIFVSNTTQRANSVYGIDQSDHQMYLNSAFFGVSWANWCDPYIADFNKEQCRDMSFGLMGTHQQ
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Institute for Fundamental Biomedical Research
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