NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210287_1170402

Scaffold Ga0210287_1170402


Overview

Basic Information
Taxon OID3300030598 Open in IMG/M
Scaffold IDGa0210287_1170402 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO747-VDE048SO (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)582
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameCanada: Quebec
CoordinatesLat. (o)47.296Long. (o)-71.1763Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093013Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0210287_11704021F093013N/AFFNYSLIFALLFSLCLGHGAVINPAFRANPNVNGGWCQWCQGDQVNSCDKTYCDPPSPCYKAPGPKTAAASSFSGYTGLKDASGQYWIDQTGGNDTVPVYCPGQTVHFSVLNYADHNGIYQFQTMPGGPGQEKEGSFKAISEWKSINMDQETTYYDIDGVTTLKPGICKGGIAWSPSVGHCRDFSLFKSSFTV
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