NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210254_11324601

Scaffold Ga0210254_11324601


Overview

Basic Information
Taxon OID3300030602 Open in IMG/M
Scaffold IDGa0210254_11324601 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO133-ANR018SO (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)856
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Variosea → Cavosteliida → Cavosteliaceae → Planoprotostelium → Planoprotostelium fungivorum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameCanada: Quebec
CoordinatesLat. (o)47.2719Long. (o)-71.2088Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033288Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0210254_113246012F033288N/AGLFCVDQPNKQYVTYQWTGKLLTKGSLSFLSPTIYGEYEFRFFPNGYYQHAAMSNRIKVGPQIDLNATLDKTQNKIVVTWKQISGNSYPKAWIGLYEKPETNNHNYIAWNYASKSSNELSFDAPFKPREYELRFFSNSYVDVARSNALLVEGQDKISATCENGMIAVKLNVVTVDPYYESAWLGVYFTHETNNRQWRRYKYFSNRKEDTIFKAPRTQGQYEVRMFANKTYDMILKSDSFTIPGNNM
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