Basic Information | |
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Taxon OID | 3300030606 Open in IMG/M |
Scaffold ID | Ga0299906_10046545 Open in IMG/M |
Source Dataset Name | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3458 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 42.9888 | Long. (o) | -108.3994 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F030494 | Metagenome | 185 | Y |
F035366 | Metagenome | 172 | Y |
F060113 | Metagenome | 133 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0299906_100465453 | F060113 | N/A | MIWFFERPGERLQCEIRQAASGPGFEIVWTSSDGRIHVELSNDASELIRRRRALEHWLKLDGWIRPGRVTPVRPSRNQRTRRTDIRLH |
Ga0299906_100465454 | F030494 | AGG | MKRIVPGAQQTEPAAPKRSAAAARRRADLVGTPVFWLTLVVTLCALVPLALFPATRAWLGCVILLMWACFFTANAVRSRRIHSMISAPVYLLAAALLAGTARGLVVVDIWMVWVLGAGIIAANLSERFFGKYL |
Ga0299906_100465455 | F035366 | N/A | MITNKNDANKAAVLERLSAVRSALRKEPENPAAKRALEQCDRLELAITQFHAEGLRFAAFTLLRTVFSQGTVFTDPVHLATQNLKSALETAGYPH |
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