NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0299915_10002674

Scaffold Ga0299915_10002674


Overview

Basic Information
Taxon OID3300030613 Open in IMG/M
Scaffold IDGa0299915_10002674 Open in IMG/M
Source Dataset NameSoil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT92D227
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12984
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)42.9888Long. (o)-108.3994Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075043Metagenome / Metatranscriptome119Y
F092306Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0299915_1000267410F075043AGGAGGMRRLVAMMKDIRKDGLTRAYLARNETVPQERLAEVDSKFKFLDDNLNGVMADGASERFMEVMTSADFTYAIQEFVQRKALPGYQRKVFNFEPLVKPDTLPNYLPVTRYQNRAGVDDLEYVGEKAQARPGSVDDATKRQYQVYRWEKQYEFSHEALVNDDLGYFEDLASKMGEAARRTLEKFVSRMYTNAVSIAALVVAGALYAQNGRLTTARVSECRMAFNQRTDARGEAINASLAYIVHHSGLKDTALQILESTQVAELATNAKNIVSFTPIEDPYIAGAAPNLPWYGFLDYNAAGIVPFVLARRQGVPGPLILRRKSDIESVTSLLGAGAAVDPIWGDFASGNIVLKVVDVWGTYIGGAGIGNLFDIRGAYYSTGTAP
Ga0299915_1000267411F092306AGGAGGMTMPTTFQEGTNWQQSSEPFLAVDVQEQDCWPVDTRSESGAKDQLAPGLHPVVAIGGVTAADGRPLNKVGVVVSYAGAGGGVATDRVEINIAEGTIVRQWVSNIKTYAGEAPATFESTPVLGQPVYVDDSADLSAGVTLSFSALNHAGTKNPMAGVLWYCQDEIADGLAGGGRATSTFDLALPETIYEQEYCIMLCQTAQEVL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.