NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311356_10945512

Scaffold Ga0311356_10945512


Overview

Basic Information
Taxon OID3300030617 Open in IMG/M
Scaffold IDGa0311356_10945512 Open in IMG/M
Source Dataset NameII_Palsa_N2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)809
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Paraneoptera → Hemiptera → Sternorrhyncha → Coccoidea → Coccidae → Rhodococcus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011126Metagenome / Metatranscriptome295Y
F024158Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0311356_109455121F011126N/AMPDIAEMNAEPAAVQPPKHPLHALTSYELRYYRRDLEHAIKTISAGAPVQADLRRKLDAVTAEQEDRAKLAAHA
Ga0311356_109455122F024158N/AMRDHQVTRLTDIELQRARRELAASLALARPDSPARIPILARMTAIDTELAGRAARARPGE

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