NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268386_10001488

Scaffold Ga0268386_10001488


Overview

Basic Information
Taxon OID3300030619 Open in IMG/M
Scaffold IDGa0268386_10001488 Open in IMG/M
Source Dataset NameSoil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16098
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)42.9888Long. (o)-108.3994Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000982Metagenome / Metatranscriptome814Y
F101460Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0268386_100014885F101460N/AMEAVLKRAVILPFIAIASAASAVEALPPSGELNCDDGRLETCEFVDPGSGLRVRLPQDWPMRRLRVSTETGPPAWVRQQFAERWVVIDYVPEEPANPEVSLFSAAVIPRAAWLRLSASPEPAPGIEVASSPSLTVIAAQGRTNPYPPDSRDAQIYEALIPSLEEISLILTLRPAR
Ga0268386_100014886F000982GAGGMPSFRSSSRANNLLQHHRTRGRSYPTPRYWERLFQMLEEEAEKRGKTPPPPPLTHGLEHDPTEEDKVERLREQLSWADRNNLLHRIQMFFESMPPSGWEKLS
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