NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210268_1089871

Scaffold Ga0210268_1089871


Overview

Basic Information
Taxon OID3300030629 Open in IMG/M
Scaffold IDGa0210268_1089871 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO153-ARE093SO (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)824
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameCanada: Quebec
CoordinatesLat. (o)47.321Long. (o)-71.0886Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001824Metagenome / Metatranscriptome630Y
F026724Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0210268_10898711F026724GGAVGFLPLLDGARPAGVLGWVPRVAPVVTQAAVGAGHLAAGRRRRALAAWTSAAGYGLVAWGLGTEAPTAAEVRENMEQYIQRLQREGVLREPGPTAPAAARTPGPAARRLERYLSR
Ga0210268_10898712F001824GGAGGLREPGPTAPAAARTPGPAARRLERYLSRVAPLFRAIDTPQYRLASTVVVMVLGVWWGLRHPRRLTVLAIASESYTVVFYVPWVARAVQRRRPRTAAGWALVIAGSVARLRAASAEPLR
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