NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210250_10315078

Scaffold Ga0210250_10315078


Overview

Basic Information
Taxon OID3300030632 Open in IMG/M
Scaffold IDGa0210250_10315078 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO132-ANR004SO (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1006
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameCanada: Quebec
CoordinatesLat. (o)47.2662Long. (o)-71.2166Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024008Metagenome / Metatranscriptome207N

Sequences

Protein IDFamilyRBSSequence
Ga0210250_103150782F024008GAGMAYGSMTVRDYMKKEGTIQAMKDIQTNNPTRDDVGRAAQAVIDALLRVDADLDFKPYSLMPALEKRKLKDIFGKEEKGPIVELPKDVRNLLNAGALMIKHSKTAPPRKKHVYVDLEFKKIIWKDPKEKGLNPKNVMKVGLIKQVEKGLATAPLQRTTLIGGKHLAKEDCSFACIGRERSIDLECQSHEEREKWVHAIEVLLEWKKGLKMQASVFGHNRG
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