Scaffold Ga0307402_10919525

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307402_10919525

Scaffold Ga0307402_10919525

Overview

Basic Information
Taxon OID	3300030653 Open in IMG/M
Scaffold ID	Ga0307402_10919525 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic phytoplankton communities from Antarctic Ocean - PS103-29 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	509
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-70.3658	Long. (^o)	-8.2821	Alt. (m)		Depth (m)	30
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004250	Metatranscriptome	446	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307402_109195251	F004250	N/A	TWLTALFQVLYRTTFIFSRMLANAMWQTQAALHGKSNNVTLPAILVGAASALVVYKHFMDEEAGDPTKQFLALIVIQMLPLVFLEMKILSCPDPVGMLSQFGAKVLLMHACFLALRVSAWPLLEVGLGFCNLLGLVAAIGALYCGFRSQFKNWSAHSDVCGLLLLAVVG

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