NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316363_10274818

Scaffold Ga0316363_10274818


Overview

Basic Information
Taxon OID3300030659 Open in IMG/M
Scaffold IDGa0316363_10274818 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)679
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040783Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0316363_102748182F040783GAGGMKTEKEAAVSWKTDETKTNIVASVEFTVRASLREEYVDADFVHSILGRVFVKSEDLRDEEDAGYLRASLVQFGEAMDHGVSTERLGDGIEGSIAEYWELLFDLETGYWTEEIQDEYEPSGCDLLIIDCVEIRPRWRGLGVGPAAVDRTIDIFGPGCGLVACKPWPLQFTPAFAHDQKALKRLKAPGLGRDEAVHKLRAYWS
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