NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307401_10225507

Scaffold Ga0307401_10225507


Overview

Basic Information
Taxon OID3300030670 Open in IMG/M
Scaffold IDGa0307401_10225507 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic phytoplankton communities from Antarctic Ocean - PS103-23 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)848
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-66.0031Long. (o)-12.2867Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002730Metagenome / Metatranscriptome534Y
F019482Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0307401_102255071F002730N/AMDIDDLLEGLDGVLEDWLNGLHDTESSLHIVDLRLHALDGLHLSGDLNEWLSIIKSLKDSSGKSFLDVLDG
Ga0307401_102255072F019482N/ALEGLDGVLKDWLDGLHDTESSLHIVDLWLHTFDGLHLSGDFNEWLSIIKSLEDSSGKGFLDVLDGSGLGNGGITISSGFGHLGGREGGLEVDEEFVFSHGVVLGGGNGVRPLVSHHPARKHLARA

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