Scaffold Ga0307401_10400855

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307401_10400855

Scaffold Ga0307401_10400855

Overview

Basic Information
Taxon OID	3300030670 Open in IMG/M
Scaffold ID	Ga0307401_10400855 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic phytoplankton communities from Antarctic Ocean - PS103-23 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	624
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-66.0031	Long. (^o)	-12.2867	Alt. (m)		Depth (m)	40
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009076	Metatranscriptome	323	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307401_104008551	F009076	GAGG	MLKGIYDTQCAFKCFKREDLMEITKDVKSLQADFDMELLLCGLLHYRKAGVKQAKLAYVASTLFTEDFAESNFAATADDPDKPYKTYATMTTGLVGMHERFIDQESDEAKDVKELADFCRGMTWESYKKMHDKLNERGNTLFDHDFKLEELKAAAA

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