Scaffold Ga0307398_10650038

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307398_10650038

Scaffold Ga0307398_10650038

Overview

Basic Information
Taxon OID	3300030699 Open in IMG/M
Scaffold ID	Ga0307398_10650038 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic phytoplankton communities from Antarctic Ocean - PS103-11 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	584
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-66.538	Long. (^o)	-0.0103	Alt. (m)		Depth (m)	40
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002730	Metagenome / Metatranscriptome	534	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307398_106500382	F002730	N/A	MGRRQHCSALIRSFLAHTSDINDLLEGLDGILEDWLNRLHDTESSLHIVDLWLHAFDGFHFSSNFNEWLSVIESLEDSSGKGLLDVLDSGGLGNSSGFVISGFSSEGLVEG

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