NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307399_10565916

Scaffold Ga0307399_10565916


Overview

Basic Information
Taxon OID3300030702 Open in IMG/M
Scaffold IDGa0307399_10565916 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic phytoplankton communities from Antarctic Ocean - PS103-14 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)560
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.012Long. (o)-0.0106Alt. (m)Depth (m)33
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004926Metagenome / Metatranscriptome418Y

Sequences

Protein IDFamilyRBSSequence
Ga0307399_105659161F004926N/AKNGTHNDNTVMLAQLNLDAEEREALHEYNHLQQTIEQVLTRFDSRTSQMTPWDSDWAGGTEGSDLRIAKEYGIIPSAINHCKEVASEVFPLERAVTPFSEYKLRLGIGIMIEEDIQPKTVEAVQEHVANGGKLKVGGDVLVGLKRWETLVDKTPFVDQLLENMSDELTSAMEQVATLIGPSQLPDH
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