NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307927_1004870

Scaffold Ga0307927_1004870


Overview

Basic Information
Taxon OID3300030717 Open in IMG/M
Scaffold IDGa0307927_1004870 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - UN-3 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1921
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091298Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0307927_10048701F091298AGGMSSAAKLRVASSAQVLEYLSIGEPVQDTRVTGLLDLDPLVVSRWLCGEDLRGIYQPIVVRHSVLDGLDLEGRTFYEIVELVGCHVATAHFKHAYFYSSLLVEDCVFEGDFDGRGMQSDGRVVFHNTVFAGWADFSALSVRGRADLVDVSFPGGTNLLRILANGSHALLGREVNLSGCRFRPADIPAGLEATRCGILPFGERSPGGAERQWGELVGREEGDPVDVVGGPLFASHQSGTVDDDDVRTALVLASGCDVK

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