NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308137_1016820

Scaffold Ga0308137_1016820


Overview

Basic Information
Taxon OID3300030722 Open in IMG/M
Scaffold IDGa0308137_1016820 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB4_943_SCM (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1288
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)75.0007Long. (o)-150.0027Alt. (m)Depth (m)81
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005720Metagenome / Metatranscriptome392Y
F030157Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0308137_10168201F030157N/ATVDVLAAGTGEVTHPLAAANTAGLHLIREAIQAQGVNILGNGVETAAFEHTFMVRRDSLDTISSTTTAAAIQAAIRALNANSKITLTISSATAADRDMGRLSAMA
Ga0308137_10168203F005720AGGAGMTTSNATANMCRRQAFTGKGITFIEMMFDDEMVTTSTTPDTKDSVFNEMSKLVGTFGTIIAQSYALGCKATEKDAALATSIIEDELCDFYTFAVEGTPGQFNAADSTGDINLDPNQADASDPGVIADAEADIEVEIMARIAENDSAGGVHVDVRYLPADGVTSAGEEIVY
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