NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308138_1045677

Scaffold Ga0308138_1045677


Overview

Basic Information
Taxon OID3300030724 Open in IMG/M
Scaffold IDGa0308138_1045677 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB4_949_20m (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)617
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)75.0007Long. (o)-150.0027Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012720Metagenome / Metatranscriptome278Y

Sequences

Protein IDFamilyRBSSequence
Ga0308138_10456771F012720N/ALSTKATNQDQFDKFAQNVDVPIDEIKAITLKVSPTFTRDHVESVTLKSFRKVVGYDTFDSILKGDRSEKKDISDHYNVTVSMMIQRIPEESAAAPARDPFNGGKSLAESLDKGFPYDDGDSSPDNMTPNWKTKQAPAAGTNVGKLNGENVTKEALVNLIRDSDSPITQSLVQLEGMKSDADGLFKLMDANVTRGNLKNLITDKPA
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Institute for Fundamental Biomedical Research
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