NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308126_1005398

Scaffold Ga0308126_1005398


Overview

Basic Information
Taxon OID3300030726 Open in IMG/M
Scaffold IDGa0308126_1005398 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - AG5_1292_32.3 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1656
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)49
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099319Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0308126_10053982F099319AGGAGMAGSKPKHNRASILALPEMAHIKEALMLGAEQAQANGGKFDLFKPIRETPMSVIFDRHSQNGFEDGKLNPNLDKVWYSQYGIRIGDMAATNPYIGGKQLHETVSVPNTLSALKIADEILEGAEPWSDWKQYFRLIDMDTPKVNVPITKYTDTVGGAVGAQKGIEIYKESGGTPPAIGGKVETVELDTSGTNNSYRGTISVNRNDVKDNNFLSVEQSLKNAGNEFYYMIGEKLIRTLTADSAVPTDTKANLDLATPVQSEFEALINVIRGKFPGEQRNRADTMFIHPTDAMESIRNAGTNGEYPFLSRFIVGPTDNTDVVNNSGLAAALGLRNVWETPQIEQGTVLVVKRDIAQVVGLREDLTIENFDLSVGGLYESDLLVRFHAKPAHSDVGAYKI
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