NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308126_1008204

Scaffold Ga0308126_1008204


Overview

Basic Information
Taxon OID3300030726 Open in IMG/M
Scaffold IDGa0308126_1008204 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - AG5_1292_32.3 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1388
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)49
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F102081Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0308126_10082041F102081AGGAMTSWDVITPTSLGTGVAKTSLGNITKPEEVQSLIEFVPYYAPSGAVTAAESMLLETSLESNSVNLLPKRIINPVIAAGLGTTFATLIPVLEAWNCNTPLTAGATPNIQAFGQSQIANTVAPTMGVAFHWSNSKPTTPEMFYNKPDNETSTSTAATTIAGNTISINDGKVLQSVYGAITTGVVTASESYLASMQFNSNDFDNSQAIEVPLQPMSVGLGGAASALNPKGSYYKNVNMGMKPTCTISTALRLSEALTA
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