NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308126_1044663

Scaffold Ga0308126_1044663


Overview

Basic Information
Taxon OID3300030726 Open in IMG/M
Scaffold IDGa0308126_1044663 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - AG5_1292_32.3 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)630
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)49
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005848Metagenome / Metatranscriptome388Y
F016399Metagenome / Metatranscriptome247Y

Sequences

Protein IDFamilyRBSSequence
Ga0308126_10446631F016399N/ATTKIRRVARRGSKGIGSSLKTGVIGDVVKGIGAGSLITLVMSRVAPGSSITPIASTGAAFLTGGIVGGAANLILTGGLGQLGGMFGGSASAPQQEFGV
Ga0308126_10446632F005848GGAGMALPVQRTYSSTIVALNAPVFMVDNQTLQNNFLTLTPNVLQDCVNLIDPAATQILQYTLVKNGNATSVRAFSPAISATTAGRVPLGPVSMSSGSYQWQATQSAGVLFNG
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Institute for Fundamental Biomedical Research
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