NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307482_1032973

Scaffold Ga0307482_1032973


Overview

Basic Information
Taxon OID3300030730 Open in IMG/M
Scaffold IDGa0307482_1032973 Open in IMG/M
Source Dataset NameMetatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1168
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004502Metagenome / Metatranscriptome435Y
F026928Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0307482_10329731F026928GGAGVLLLAGASGLPCPFFMFGQLCVALCEADGEGLAAADAAWAAVVPVVDDVVDAVEEWLVAALATAMLPPNPTPSAPAPTAVPIMIVPSLDFNVSASSRSGDGPGTQ
Ga0307482_10329732F004502GAGVDNDVGKPGQQFRASWQAAADALGEWSKRVSEATHEAMEKIEPAVRSAVEAGRSAMTGEWRNCRCQCRTAHPADGGVCDGRAVMTRSVGGADVSLCAPCAVAQGVAEMKL

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.