NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302310_10245012

Scaffold Ga0302310_10245012


Overview

Basic Information
Taxon OID3300030737 Open in IMG/M
Scaffold IDGa0302310_10245012 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1028
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008195Metagenome / Metatranscriptome337Y
F019523Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0302310_102450121F008195AGGAGGMKPKMFRLLALVALFGAMFILNSCSSGQKNCPVCGTDKNGTIGLIGVMNVPEHNPNGEPGGPFNIFDISWVDPTNRLYYVSDRIGLDVPVFSTTSNIALWAIAGQNSVAEAGNNSSLCWVDPMTGETIPPVTSAQGNFTRFGCKTDGFRLPGGFGPNGNFGGFVGGQCCASRANNLNPLSGPNGMEVTGDGN
Ga0302310_102450122F019523N/AESGAPGWGAWAVKIRYSWLEGKAPGITCDASTIPSCPITPGIVPSFSDHTDQLTAGFNWYLNYWVLVKSDFNFNQLKNPSVQGILPRNYFVFVEGIQFRF
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