Scaffold Ga0265462_10029768

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0265462_10029768

Scaffold Ga0265462_10029768

Overview

Basic Information
Taxon OID	3300030738 Open in IMG/M
Scaffold ID	Ga0265462_10029768 Open in IMG/M
Source Dataset Name	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1635
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location Name	Canada: Quebec
Coordinates	Lat. (^o)	47.2641	Long. (^o)	-71.2157	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002337	Metagenome / Metatranscriptome	569	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265462_100297681	F002337	GGAG	MNLAIIIVVAAVLALATILSVALTQTLQARRSTNLAVSIRPIDIDAFRNLINPVEDEYLRRRLPPSQFRMVRRERLRAMAAYVEAAASNATVLVRVGEKALATGDARIAEAAQQLANDALHLRRNTTVALARIYLALLWPNSEFAAVRVVDRYERLSGAAMLLGRLQNPAVPVRLSTLR

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