NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265462_10040143

Scaffold Ga0265462_10040143


Overview

Basic Information
Taxon OID3300030738 Open in IMG/M
Scaffold IDGa0265462_10040143 Open in IMG/M
Source Dataset NameForest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1541
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameCanada: Quebec
CoordinatesLat. (o)47.2641Long. (o)-71.2157Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022474Metagenome / Metatranscriptome214Y
F029822Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0265462_100401431F029822N/ARHGHGSSVADPAAPPSVTPPALCSPCLFYGGDLNTSSSNAAGMSDENTLLIVGGSSTYGAVNIPAGVTANVYGILVNVQADANFDPLTASYDIRTGVSEGNGGTSIASGSGAAVVQATGRNFLGLNEYTVAVSWATPVALTTGEYWINATPNCTNTLDGSCYAFRQFASNTTSLANGVHAGWQPLESMFLNSSFFGFTWANWCDSSLGFNEFQCAALSFGLRGTE
Ga0265462_100401432F022474AGGAGGVKTTLFAAALVVTFTLSALAAQKPSQHLAGNPNAQPSAAISVPPPACDPCIFYGGDFDPSSPNSAGLSDENTLFIPGSSTYGNFNIPTGFTVTVTGILVNVQADAAFDPQVASYDVRQGVTEGDGGTDLATGTANATVASTGRSFLGLQEYTVAVNLATPLVLGPGNYWFNVTPECQNGATDGSCSVGRMFASNTAGGRTNSIHGAGETNHEIFLNSSFFGFTWANWCDSSLGLNGQQCNGLSFGVMGTSTP
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