NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265459_11519583

Scaffold Ga0265459_11519583


Overview

Basic Information
Taxon OID3300030741 Open in IMG/M
Scaffold IDGa0265459_11519583 Open in IMG/M
Source Dataset NameForest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)766
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameCanada: Quebec
CoordinatesLat. (o)47.2662Long. (o)-71.2166Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002337Metagenome / Metatranscriptome569Y
F095880Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0265459_115195831F095880N/ANGSFSAQYRISLVFLNMTTYHVCVLIWIYYILGPQKSATKSPVILPEHNLELWNRELERLLQP
Ga0265459_115195832F002337GGAGMNLAIVLVFAALIALGIIVRLAISRGLPARVNPSLATTIRPIDLEAFRNLINPAEDDYLRRRLPPTEFRSVRRARLRAIAAYVQVAGTNALVLVRVGESALASGNPQFAESAHRLVNDALLLRRNTTLALARIYLAWAWPNSGVAAVRVVDRYERLSGSAMLLGRLQNPAATVRLSPR
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