Scaffold Ga0265461_13410580

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0265461_13410580

Scaffold Ga0265461_13410580

Overview

Basic Information
Taxon OID	3300030743 Open in IMG/M
Scaffold ID	Ga0265461_13410580 Open in IMG/M
Source Dataset Name	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	537
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location Name	Canada: Quebec
Coordinates	Lat. (^o)	47.2736	Long. (^o)	-71.1993	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030194	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265461_134105801	F030194	N/A	AQATGVVIPQGTVASDGSDLDHSYGFGAQAYVDNGSFPSGNPGWEYDFVGQGTFSSLAFTTGSPSTLVDLSDPFASFVPGKPGEYTAVRITGTAAAPDTAGRYTFHSATPFAVGPVGAAGPTVDFTVALYEAGPGLVFSIEEDTSSEWLGTFQEQSAGSLKAMHMKRGPLVKSQAKPKR

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.