NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265762_1000260

Scaffold Ga0265762_1000260


Overview

Basic Information
Taxon OID3300030760 Open in IMG/M
Scaffold IDGa0265762_1000260 Open in IMG/M
Source Dataset NameMetatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8765
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9992Long. (o)10.7901Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001352Metagenome / Metatranscriptome717Y
F007429Metagenome / Metatranscriptome351Y

Sequences

Protein IDFamilyRBSSequence
Ga0265762_100026010F007429AGGVDEVSHRVALNAIAMKKKQKTANKSRPATKPRVQNDRLKGWDEIGGFLAQPVAVAQRWARSGMPVTREGRFLYASREELSRYLGREAGLDVPVRIATEGTDLSADLDRALAYARGGKQDRRKKAKR
Ga0265762_10002608F001352GAGGMSAVRELSPDWVLSSFIVSGGDSRDEIMELAEAARRLWPGVQAHARKEQPGKSFDEVIPMATEVWEGVLQSVAKTLQRSYGKRAQIESLDAYLFGVFHHRFNRALRKDRRKRELLRSLPSNGDLGRLRQAHDSEAQRVLERSIQVQEAVRRMDDWTRKVWAARQYGYSWREIAEHFGLTEPQAKLRFGYAIGKLRVLFSRGG
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