NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265762_1035644

Scaffold Ga0265762_1035644


Overview

Basic Information
Taxon OID3300030760 Open in IMG/M
Scaffold IDGa0265762_1035644 Open in IMG/M
Source Dataset NameMetatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)958
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9992Long. (o)10.7901Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005822Metagenome / Metatranscriptome389Y
F064903Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0265762_10356441F064903GAGGMRSLIPSNYDRADVLMSAGCSTLVSAALILVIPRIGVLLLEILFGLFFIGCALMARARVRRRVLGKEGPKKSSDAKAKWFDRYDFLMILAVIVIQTVAARLLRKAGWSEGTVSILPLIMFAAGILLKPRVVEFVERRRETHPADADCRSTAAQPENLDPTDRALGPE
Ga0265762_10356442F005822AGGAMSVNGTETIAESKGPQPPPANGRATRVAADSKATPARGMTTRRRRDRQDSEKSAEERFFLATGSRNGDLPALGRECTSEADAIINAFREQVNFYRVSEFQTRADVGPSGE
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