NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265763_1004347

Scaffold Ga0265763_1004347


Overview

Basic Information
Taxon OID3300030763 Open in IMG/M
Scaffold IDGa0265763_1004347 Open in IMG/M
Source Dataset NameMetatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI5 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1158
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9989Long. (o)10.7903Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003383Metagenome / Metatranscriptome490Y
F069734Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0265763_10043471F003383AGGAMRAVLLTRFIPKIENARDLAASGAFRMIFSSMDQCIVSFCLSMRLQVAPLPRSSRSARVASPGCPFPAPFLLSRRPNPRVAPRFRAFGCAGDGSLELPRASMPLALPVSASFPSCPGAPAFSCRACDEGLGSPLVLHLRLYRRSVIELPRCSHHSAVPTYRSSGCPKFQPFGIADDSLSESPRTSNPPAPIDGYPSYPGSRTTRFALVESPGCPGHFPLGYDD
Ga0265763_10043472F069734GAGMSPWLNRTLHLRLAPRMNLRVHSGHDKLGMASCALLISIRRFTIGKPTMNSPTETLTYALYHADVAVPTSYRAEPPVAPLESATGGGSVAT
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