NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265750_1001078

Scaffold Ga0265750_1001078


Overview

Basic Information
Taxon OID3300030813 Open in IMG/M
Scaffold IDGa0265750_1001078 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2453
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9979Long. (o)10.7895Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013584Metagenome / Metatranscriptome270Y
F097836Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0265750_10010783F097836N/AMFCPNCKAEYREGFTRCADCDVELVYELSAAAIIPIEPIDPGDPVEDPFCSFWKGDDPRVHAELCELFAEQDIPFKTIRRQDHLFNWNTKSAFEIGVPFSRFDKAEAVVKEAYGGDEEPVSEDVARTLELPEVVEPREPHPARGPGDCYPEDATLEIWEGKQEEMGELLAASLGENQIHSRMAEAKGTYRLFVLPADETRARKIVREVVEGVPPE
Ga0265750_10010784F013584GGAGGMAASPGPEGSLVMLWAGEDPALHSSLIEELQSAGIPFIDRPTGDDQVPPSADILPIDWKTQFGFEVAVPSSNRAAAEKILERLLDQEPADMEIAANDSAQPGVADVKPAHLSATTCAVWTGADETRADFLVEALKENEIPARAETRGSEATVYVPPEEEMLAREIIREIVEGAPPA
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