NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102749_1433873

Scaffold Ga0102749_1433873


Overview

Basic Information
Taxon OID3300030867 Open in IMG/M
Scaffold IDGa0102749_1433873 Open in IMG/M
Source Dataset NameForest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 2C (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)560
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameNew Mexico, USA
CoordinatesLat. (o)35.8911Long. (o)-106.2978Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048656Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0102749_14338731F048656N/AGRHRVMTVREGGTAMFEKTREIIRKDRYGFPDEEFPHRVVIMGNPQARLSRKELSLMTGCEPILAGDIQDNPTYDRSLPPSQENFLFTVTVTVELLGGTRNLVCDGKTLYLVHGERKYRLNDEGLVRKRAVQLEIKAKELAKVFEALEDRILRAVTEVRPSGVDWLPPVLSR
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