NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075386_10019742

Scaffold Ga0075386_10019742


Overview

Basic Information
Taxon OID3300030916 Open in IMG/M
Scaffold IDGa0075386_10019742 Open in IMG/M
Source Dataset NameForest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)757
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Champenoux
CoordinatesLat. (o)48.7585Long. (o)6.3578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008758Metagenome / Metatranscriptome328Y
F048140Metagenome / Metatranscriptome148Y
F090153Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0075386_100197421F048140N/AMLLHEASIIATKERAEMKMIEFFIARKIVVHGAGHSITNCCES
Ga0075386_100197422F008758N/AVLKCDSGATCEAASRLLPSKTNAAKVWVVYQKNMRKTILLAGCALLLGTTVIASDFAADPLSFRNPQQDLFGNLSEMICETKELQSCEKQQEEALQRFLEVGLSLNAAALMAHNQYPCD
Ga0075386_100197423F090153N/AQAWWRSRSHWFTEEFAKLINQLQQTAKPPTLYREPMEDE
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