Scaffold Ga0138296_1713980

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0138296_1713980

Scaffold Ga0138296_1713980

Overview

Basic Information
Taxon OID	3300030923 Open in IMG/M
Scaffold ID	Ga0138296_1713980 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	763
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location Name	South-western Pyrenees, Aspurz, Spain
Coordinates	Lat. (^o)	42.0	Long. (^o)	1.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054606	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138296_17139801	F054606	AGGAG	MAGSNQPYVLHSAEGRPISSPMTSGGDSGDFESFITHPWRKYCTSRWEFLPRVIPPTVFAITILIIILILDTKLKVHPGRAYQRTSVAGYSALEQAGTAARVNAILKAWSPTQRLTAAFDSGLHLLFLFMYASVMTMCCCWGANHSPFKLIGDVLAWLQLFGAFFDVILQSSCAYMTIHGPTTGLPELTLACVILHLLSLCLGGLYFVICRIGHWTVWSDISRRGPYDDKVY

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